Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5419

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13786 and 13787 are separated by 305 nucleotides13787 and 13788 are separated by 350 nucleotides mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56,919 to 58,432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58,738 to 60,106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60,457 to 62,427 13788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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57,776 + 13786 mRNA_5418 0.57 -0.8
57,778 - 13786 mRNA_5418 0.57 +1.9
57,948 - 13786 mRNA_5418 0.68 +1.0
58,060 - 13786 mRNA_5418 0.75 +0.8
58,079 - 13786 mRNA_5418 0.77 -0.5
58,138 - 13786 mRNA_5418 0.81 -0.2
58,166 - 13786 mRNA_5418 0.82 -0.3
58,212 - 13786 mRNA_5418 0.85 +0.7
58,214 + 13786 mRNA_5418 0.86 +0.0
58,395 + +0.4
58,519 - -0.4
58,682 + +1.3
58,816 + -0.2
59,111 + 13787 mRNA_5419 0.27 +0.2
59,124 + 13787 mRNA_5419 0.28 -0.9
59,195 - 13787 mRNA_5419 0.33 +1.7
59,258 - 13787 mRNA_5419 0.38 +0.4
59,418 + 13787 mRNA_5419 0.50 -0.2
59,424 + 13787 mRNA_5419 0.50 -0.2
59,456 + 13787 mRNA_5419 0.52 +0.0
59,511 + 13787 mRNA_5419 0.56 +0.5
59,516 - 13787 mRNA_5419 0.57 +0.4
59,547 - 13787 mRNA_5419 0.59 +0.1
59,547 - 13787 mRNA_5419 0.59 +0.0
59,554 + 13787 mRNA_5419 0.60 +1.2
59,664 - 13787 mRNA_5419 0.68 +0.5
59,749 - 13787 mRNA_5419 0.74 +1.9
59,831 + 13787 mRNA_5419 0.80 -0.2
59,849 - 13787 mRNA_5419 0.81 +0.3
59,870 - 13787 mRNA_5419 0.83 -0.1
60,011 + -0.1
60,012 + -0.3
60,012 + +1.1
60,019 + +0.7
60,116 - +1.7
60,260 + +0.3
60,289 + +0.1
60,292 - +1.3
60,306 - +0.1
60,320 + +1.2
60,596 + +0.1
60,598 - -0.3
60,688 + 13788 mRNA_5420 0.12 +0.2
60,786 - 13788 mRNA_5420 0.17 +0.3
60,788 + 13788 mRNA_5420 0.17 -1.1
60,861 - 13788 mRNA_5420 0.20 +0.1
60,882 - 13788 mRNA_5420 0.22 -1.3
60,988 - 13788 mRNA_5420 0.27 -1.0
61,048 - 13788 mRNA_5420 0.30 +0.3
61,086 + 13788 mRNA_5420 0.32 -0.1

Or see this region's nucleotide sequence