Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5436

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13804 and 13805 are separated by 2 nucleotides13805 and 13806 are separated by 344 nucleotides mRNA_5436: 13804 - Hypothetical Protein, at 94,082 to 95,346 13804 mRNA_5437: 13805 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 95,349 to 95,702 13805 mRNA_5438: 13806 - K06867 K06867 uncharacterized protein, at 96,047 to 99,541 13806

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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93,129 - +0.6
93,137 - +0.5
94,364 + 13804 mRNA_5436 0.22 +0.4
94,470 + 13804 mRNA_5436 0.31 +0.1
95,691 + +0.2
95,703 + +1.4
95,944 + -0.2
95,957 - +0.5
96,077 - -0.1
96,094 - -0.4

Or see this region's nucleotide sequence