Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5450

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13817 and 13818 are separated by 314 nucleotides mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509 13817 mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253 13818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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117,966 + 13817 mRNA_5449 0.51 -0.2
117,972 + 13817 mRNA_5449 0.51 -0.0
118,025 - 13817 mRNA_5449 0.56 -0.9
118,074 - 13817 mRNA_5449 0.60 +0.0
118,099 + 13817 mRNA_5449 0.63 +0.6
118,263 + 13817 mRNA_5449 0.78 +0.7
118,367 - 13817 mRNA_5449 0.87 +1.2
118,375 - 13817 mRNA_5449 0.88 +0.5
118,392 + 13817 mRNA_5449 0.89 +0.0
118,395 - 13817 mRNA_5449 0.90 +0.2
118,395 - 13817 mRNA_5449 0.90 +0.1
118,395 - 13817 mRNA_5449 0.90 +0.4
118,401 + -0.8
118,488 - +0.6
118,489 + -0.0
118,831 - +0.5
118,836 + +0.1
118,936 + +0.9
119,291 + 13818 mRNA_5450 0.19 +0.4
119,583 - 13818 mRNA_5450 0.31 +1.5
119,721 - 13818 mRNA_5450 0.37 -0.8
119,901 - 13818 mRNA_5450 0.44 -1.3
120,138 - 13818 mRNA_5450 0.54 +0.1
120,338 - 13818 mRNA_5450 0.62 +0.6
120,605 + 13818 mRNA_5450 0.73 -0.8
120,775 + 13818 mRNA_5450 0.80 +0.4
120,931 + 13818 mRNA_5450 0.87 +0.9
121,143 - +0.3
121,201 - +0.5
121,226 + +1.1
121,317 + +0.5
121,539 - -0.5
121,770 - -0.3
121,785 + +0.2
121,938 + -0.3
122,078 - +0.9
122,080 + -0.1
122,093 - -0.6
122,096 - -0.1
122,116 - +0.5

Or see this region's nucleotide sequence