Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5456

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13823 and 13824 are separated by 978 nucleotides mRNA_5455: 13823 - PRINTS-Proline rich extensin signature-PR01217, at 127,817 to 128,320 13823 mRNA_5456: 13824 - K07034 K07034 uncharacterized protein, at 129,299 to 130,839 13824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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128,340 - +0.2
128,478 + -0.3
128,507 - +0.8
128,517 + +0.0
128,533 + +0.2
128,553 + -0.1
128,612 - +2.2
128,622 + +0.5
128,625 + +0.5
128,629 + +0.1
128,635 - -0.2
128,640 - +0.6
128,666 + +0.8
128,681 - +1.3
128,682 - -0.2
128,696 - +0.4
128,709 - +0.8
128,716 - -1.3
128,717 + +1.2
128,732 - +0.4
128,769 + -0.0
128,773 + +1.7
128,789 + -0.1
128,799 - +0.8
128,800 + -1.3
128,801 - +1.3
128,802 + +0.1
128,813 + -1.2
128,813 + -1.0
128,823 + -0.2
128,842 - +0.1
128,852 - -0.2
128,859 + +0.6
128,860 + -0.1
128,863 - +2.5
128,870 - +0.5
128,873 + +1.2
128,876 + +0.1
128,890 - +0.0
128,895 - +1.4
128,904 + -0.1
128,996 - -1.1
129,001 + -1.2
129,025 + +0.1
129,031 + +0.2
129,036 + +0.5
129,051 - -0.6
129,053 - +0.3
129,055 + -0.3
129,058 + -0.1
129,064 - -2.0
129,064 + -0.4
129,067 + +1.7
129,074 + -0.9
129,092 + +0.4
129,101 - +0.5
129,102 - +0.1
129,103 - +0.2
129,106 + +0.6
129,116 + -0.1
129,117 - -1.8
129,120 + -0.3
129,160 - +2.4
129,176 - +0.1
129,189 + +0.8
129,192 + +1.3
129,219 - -0.8
129,220 - -0.1
129,221 + +0.1
129,222 - +0.5
129,223 - -0.6
129,225 + +1.0
129,230 - +0.6
129,231 + +1.5
129,232 - +1.4
129,237 + +0.2
129,239 + -0.1
129,242 - +0.0
129,249 - +1.9
129,390 + +0.2
129,396 - +1.2
129,419 + +1.0
129,427 + +0.4
129,535 + 13824 mRNA_5456 0.15 +1.6
129,545 - 13824 mRNA_5456 0.16 +2.0
129,609 + 13824 mRNA_5456 0.20 -0.6
129,680 - 13824 mRNA_5456 0.25 -0.1
129,719 - 13824 mRNA_5456 0.27 -0.5
130,319 - 13824 mRNA_5456 0.66 +0.7
130,404 - 13824 mRNA_5456 0.72 +0.7
131,152 - +0.6
131,182 + +0.9
131,208 - +0.4
131,212 + +0.7
131,312 - +0.8
131,320 + +0.3
131,338 + -0.2
131,375 + +0.3
131,397 - +0.8
131,495 + +0.5
131,520 + +0.1

Or see this region's nucleotide sequence