Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5457

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13825 and 13826 are separated by 753 nucleotides mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132,935 to 135,021 13825 mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466 13826

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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132,179 + +0.2
132,570 + -1.2
132,681 + +0.2
132,729 + +0.4
132,731 - -0.4
132,974 + +0.3
133,257 + 13825 mRNA_5457 0.15 +1.0
133,276 + 13825 mRNA_5457 0.16 +0.3
133,406 - 13825 mRNA_5457 0.23 -0.7
133,629 - 13825 mRNA_5457 0.33 +2.1
133,862 - 13825 mRNA_5457 0.44 -0.6
134,425 + 13825 mRNA_5457 0.71 -1.0
134,559 + 13825 mRNA_5457 0.78 -0.3
134,692 - 13825 mRNA_5457 0.84 +2.4
134,700 + 13825 mRNA_5457 0.85 +1.9
134,846 + +0.3
134,958 - +1.6
134,994 - +1.2
134,994 + -0.1
135,005 - -0.0
135,112 - +0.2
135,133 - +0.4
135,133 - -1.0
135,142 + -0.0
135,152 - +0.3
135,155 + +1.4
135,160 + +0.7
135,165 + +0.4
135,192 - -0.3
135,210 + -0.2
135,228 - +1.2
135,238 - +0.5
135,271 - +0.6
135,284 + -0.4
135,285 - +1.3
135,287 + +1.6
135,290 - -0.3
135,299 - -1.9
135,310 - -0.5
135,319 + +0.3
135,319 + +0.4
135,327 - -0.1
135,354 - -0.3
135,446 - +0.5
135,446 - -0.3
135,464 + +0.5
135,464 + -0.1
135,485 - +0.8
135,486 - +1.1
135,486 - -0.9
135,489 + +0.1
135,493 + +0.6
135,506 + +0.4
135,510 + +0.5
135,511 + -0.1
135,560 - +0.4
135,560 - -1.3
135,570 + +0.3
135,571 - -1.0
135,577 - +0.5
135,580 + +0.1
135,581 + -0.4
135,586 + +0.5
135,586 - -0.5
135,607 - +0.9
135,616 + -2.1
135,627 + +0.5
135,632 - -0.2
135,647 - +1.3
135,654 + +0.7
135,656 + +1.2
135,682 - -0.8
135,688 + +0.8
135,724 + +0.2
135,728 + +0.7
135,818 - +0.7
135,825 - -0.5
135,864 - +0.4
135,929 - -0.1
135,944 - +0.0
135,985 + 13826 mRNA_5458 0.12 -0.3
135,990 - 13826 mRNA_5458 0.13 +0.9

Or see this region's nucleotide sequence