Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5463

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13830 and 13831 are separated by 550 nucleotides13831 and 13832 are separated by 953 nucleotides mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148,438 to 149,863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150,414 to 154,047 13831 mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155,001 to 155,781 13832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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149,447 + 13830 mRNA_5462 0.71 +1.5
149,450 - 13830 mRNA_5462 0.71 +0.9
149,498 - 13830 mRNA_5462 0.74 +0.2
149,572 + 13830 mRNA_5462 0.80 +0.6
149,680 + 13830 mRNA_5462 0.87 -0.4
149,932 + -0.4
150,239 - -0.2
150,328 + +0.6
150,393 - +0.1
150,536 + +0.8
150,671 + +0.6
151,138 + 13831 mRNA_5463 0.20 -0.2
151,315 - 13831 mRNA_5463 0.25 -0.7
151,548 - 13831 mRNA_5463 0.31 +0.5
151,602 - 13831 mRNA_5463 0.33 +0.6
151,650 + 13831 mRNA_5463 0.34 +0.8
152,149 + 13831 mRNA_5463 0.48 -0.8
152,311 + 13831 mRNA_5463 0.52 +0.7
152,320 - 13831 mRNA_5463 0.52 +0.1
152,599 + 13831 mRNA_5463 0.60 +1.2
152,644 + 13831 mRNA_5463 0.61 +0.5
152,684 - 13831 mRNA_5463 0.62 +0.1
152,899 - 13831 mRNA_5463 0.68 +0.3
152,995 + 13831 mRNA_5463 0.71 +0.9
153,020 - 13831 mRNA_5463 0.72 +1.7
153,645 + 13831 mRNA_5463 0.89 +0.6
153,668 + 13831 mRNA_5463 0.90 +0.5
153,774 - +1.8
153,813 - +0.1
153,820 - +0.6
153,921 - +1.1
153,924 - +1.5
153,932 - +0.1
153,934 - -0.6
153,939 - -0.2
153,940 - +1.8
153,944 + +0.6
153,946 + +1.4
153,949 + +0.0
153,949 - +0.5
153,957 + +0.2
153,958 - -0.7
153,959 + +0.3
153,961 + +1.0
153,961 - +0.3
153,963 + -0.6
153,964 - -0.2
153,967 + +0.3
153,967 + -0.0
153,968 + -0.3
153,970 - +1.5
153,981 + +0.3
154,101 - -0.3
154,110 + +0.5
154,110 + +0.9
154,116 + +0.3
154,129 - +0.5
154,130 - +1.6
154,131 + +0.6
154,132 - -1.4
154,133 - +0.7
154,143 + +0.0
154,153 - +0.2
154,156 + +0.8
154,157 + -0.7
154,170 + -0.0
154,204 + +0.6
154,204 - -0.0
154,204 + +0.6
154,250 + +0.9
154,267 - +0.2
154,284 + +0.3
154,285 - +0.2
154,301 - +0.8
154,301 - -0.2
154,310 - +1.1
154,316 - +0.7
154,320 - +0.5
154,320 - +0.4
154,321 + +0.5
154,324 + +0.5
154,327 - +0.2
154,330 - +0.2
154,332 + -1.0
154,337 - -0.1
154,350 + +0.9
154,437 + +1.1
154,450 + +1.0
154,455 - -0.5
154,460 + -0.6
154,473 - -0.3
154,491 + +0.2
154,495 - -1.1
154,546 + +0.0
154,552 + -1.0
154,564 + +0.3
154,579 + +0.3
154,581 + -0.1
154,592 - +0.1
154,599 - +0.8
154,681 - +0.2
154,685 + +0.2
154,710 - +0.4
154,723 + +0.1
154,738 + +0.5
154,753 - -0.3
154,764 - +0.4
154,764 - +1.3
154,771 + -0.5
154,773 - +0.5
154,814 + +0.7
154,930 - +0.5

Or see this region's nucleotide sequence