Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5492

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13860 and 13861 are separated by 429 nucleotides mRNA_5492: 13860 - K15436 TRPO3, MTR10 transportin-3, at 223,260 to 226,500 13860 mRNA_5493: 13861 - KOG0297 TNF receptor-associated factor, at 226,930 to 227,786 13861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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222,319 + +1.1
222,336 - +0.5
222,449 - +0.8
222,469 - -1.3
222,556 - -0.3
222,792 - +0.9
222,903 + +1.5
222,906 + +1.0
222,918 + +1.1
222,930 + -0.2
222,937 + +1.4
222,969 + -0.3
223,050 - -0.5
223,050 - +0.3
223,060 + +0.2
223,330 - +0.5
223,334 - +0.7
226,592 + +0.6
226,608 - +0.8
226,611 + -0.5
226,612 + +0.6
226,613 - +0.9
226,623 + -0.4
226,756 - +0.4
227,066 + 13861 mRNA_5493 0.16 +0.0
227,196 + 13861 mRNA_5493 0.31 +0.2
227,211 + 13861 mRNA_5493 0.33 +0.2
227,232 + 13861 mRNA_5493 0.35 +0.0
227,489 - 13861 mRNA_5493 0.65 +0.6

Or see this region's nucleotide sequence