Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5509

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13876 and 13877 are separated by 456 nucleotides13877 and 13878 are separated by 735 nucleotides mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265,643 to 266,758 13878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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263,365 - 13876 mRNA_5508 0.80 +1.0
263,445 - 13876 mRNA_5508 0.87 -0.2
263,578 - -1.2
263,579 + +1.5
263,582 - +0.2
263,689 - -0.5
263,708 - +0.2
263,718 - -0.3
263,727 - +0.0
263,732 + +0.6
263,732 + -0.4
263,736 - +0.3
263,749 + +0.3
263,844 + -0.1
263,878 + +0.6
264,436 - 13877 mRNA_5509 0.45 +1.9
264,473 + 13877 mRNA_5509 0.50 +1.2
264,623 - 13877 mRNA_5509 0.67 -1.0
265,467 - +0.2
265,492 + -0.6
265,493 + +0.9
265,529 - -0.2
265,607 + +0.7
265,632 - -0.2
265,753 - +0.2
265,907 - 13878 mRNA_5510 0.24 -0.4

Or see this region's nucleotide sequence