Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5512

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13879 and 13880 are separated by 456 nucleotides13880 and 13881 are separated by 531 nucleotides mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267,375 to 268,513 13879 mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268,970 to 271,571 13880 mRNA_5513: 13881 - KOG4178 Soluble epoxide hydrolase, at 272,103 to 273,154 13881

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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268,157 + 13879 mRNA_5511 0.69 -0.1
268,280 - 13879 mRNA_5511 0.79 +0.2
268,429 + +1.4
268,430 - -0.4
268,431 + +0.9
268,454 - +0.2
268,555 - +0.0
268,556 + +0.6
268,678 - +0.8
268,681 - +0.5
268,684 - +1.5
268,862 + +0.9
271,630 + +0.5
271,959 + -1.0
271,987 - -0.2
272,379 + 13881 mRNA_5513 0.26 +0.1
272,402 - 13881 mRNA_5513 0.28 +0.4
272,447 - 13881 mRNA_5513 0.33 +0.5
272,564 - 13881 mRNA_5513 0.44 +0.3
272,567 - 13881 mRNA_5513 0.44 +0.8

Or see this region's nucleotide sequence