Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5517

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280,339 to 282,741 13885

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
279,435 - +1.2
279,550 + +0.9
279,552 - +0.3
279,562 + +2.2
279,565 + +0.4
279,589 + +0.3
279,710 - +0.6
279,711 + +0.7
279,716 - +0.8
279,726 + +0.1
279,747 + +0.6
279,846 + -0.5
279,864 + +0.4
279,866 - +0.4
279,874 + -0.3
279,883 + +0.7
279,902 + +0.5
280,009 - -0.1
280,050 + +0.5
280,053 - +0.9
280,092 + +1.7
280,135 + +0.1
280,173 + +0.7
280,186 + -0.5
280,451 - +1.0
280,457 + -0.2
280,625 - 13885 mRNA_5517 0.12 +0.2
280,918 + 13885 mRNA_5517 0.24 +0.9
281,056 + 13885 mRNA_5517 0.30 +0.5
281,223 + 13885 mRNA_5517 0.37 +0.3
281,403 + 13885 mRNA_5517 0.44 +2.1
281,474 - 13885 mRNA_5517 0.47 -1.2
281,813 + 13885 mRNA_5517 0.61 +1.1
281,817 - 13885 mRNA_5517 0.62 -0.7
281,915 + 13885 mRNA_5517 0.66 -0.2
281,918 - 13885 mRNA_5517 0.66 +1.3
282,084 - 13885 mRNA_5517 0.73 +0.3
282,441 + 13885 mRNA_5517 0.87 +0.3
282,669 - +0.2
282,949 + +0.7
283,108 - +0.1
283,138 + -0.6
283,404 - +0.3
283,426 - -0.2
283,532 - +0.7
283,544 - +0.7
283,571 + +0.0

Or see this region's nucleotide sequence