Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5518

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13886 and 13887 are separated by 666 nucleotides mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832 13887

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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286,709 - -1.0
287,231 - -0.5
287,268 - +0.9
287,510 + +0.5
287,513 - -0.1
287,595 + 13886 mRNA_5518 0.20 +0.7
287,639 + 13886 mRNA_5518 0.29 +0.5
287,653 + 13886 mRNA_5518 0.32 +1.7
288,039 + +0.6
288,175 - +0.5
288,198 - +1.0
288,211 + -0.1
288,263 + +0.7
288,402 - -0.1
288,497 + +0.4
288,636 - +0.7
288,900 - 13887 mRNA_5519 0.20 +0.9
288,902 - 13887 mRNA_5519 0.20 +0.2
288,936 - 13887 mRNA_5519 0.23 -0.2

Or see this region's nucleotide sequence