Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5529

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13896 and 13897 are separated by 244 nucleotides mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425 13896 mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306,670 to 307,631 13897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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305,722 - +1.0
305,837 - +0.1
306,006 - 13896 mRNA_5528 0.36 -0.5
306,125 - 13896 mRNA_5528 0.54 +1.4
306,134 - 13896 mRNA_5528 0.55 +0.2
306,170 + 13896 mRNA_5528 0.61 +0.5
306,292 - 13896 mRNA_5528 0.79 +0.6
306,315 + 13896 mRNA_5528 0.83 +0.1
306,341 - 13896 mRNA_5528 0.87 +0.2
306,432 - +0.2
306,440 + +0.7
306,446 - +0.9
306,452 - +0.4
306,761 + -1.2
306,863 + 13897 mRNA_5529 0.20 +0.2
307,175 + 13897 mRNA_5529 0.52 +0.5
307,183 + 13897 mRNA_5529 0.53 +0.3
307,354 - 13897 mRNA_5529 0.71 +0.5
307,663 + +0.5
307,674 + -0.9
307,768 + +0.1
307,789 - +0.8
307,811 + +0.5
307,907 + +0.3
307,923 + +0.2
308,040 - +0.8
308,075 - +0.4
308,086 + +0.1
308,092 - +0.3
308,095 - +0.4
308,098 + +0.3
308,108 - +0.3
308,218 - +0.5
308,235 - +0.9
308,239 + +0.3
308,420 + +0.2
308,513 - +0.3
308,521 + +0.1
308,524 + +0.5
308,525 - +0.2
308,534 - -0.8
308,543 - +0.0
308,543 + +1.2
308,554 + +1.0

Or see this region's nucleotide sequence