Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5559

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13926 and 13927 are separated by 86 nucleotides13927 and 13928 are separated by 80 nucleotides mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376,866 to 377,685 13926 mRNA_5559: 13927 - KOG2406 MADS box transcription factor, at 377,772 to 380,881 13927 mRNA_5560: 13928 - BLAST PROTEIN D2013.6 [Ceraceosorus bombacis], at 380,962 to 381,944 13928

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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376,772 + +1.5
376,776 - -0.3
376,912 - +0.2
376,928 + +0.7
376,963 - 13926 mRNA_5558 0.12 -0.1
377,207 - 13926 mRNA_5558 0.42 +0.8
377,212 + 13926 mRNA_5558 0.42 +0.8
377,422 + 13926 mRNA_5558 0.68 -0.2
377,540 - 13926 mRNA_5558 0.82 -0.5
380,895 + +0.2
380,903 - +0.6
380,906 + -0.6
380,920 - -0.1
381,183 - 13928 mRNA_5560 0.22 -1.0
381,633 - 13928 mRNA_5560 0.68 -0.1

Or see this region's nucleotide sequence