Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5596

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13964 and 13965 are separated by 878 nucleotides mRNA_5596: 13964 - KOG2806 Chitinase, at 469,041 to 471,762 13964 mRNA_5597: 13965 - Hypothetical Protein, at 472,641 to 473,822 13965

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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468,608 + +0.6
468,636 - -0.4
468,645 + -0.5
468,653 - -0.8
468,656 + +1.4
468,657 - +0.9
468,724 - +0.1
468,728 - +0.5
469,354 + 13964 mRNA_5596 0.11 -1.5
469,516 + 13964 mRNA_5596 0.17 -0.2
470,232 - 13964 mRNA_5596 0.44 +0.2
470,498 + 13964 mRNA_5596 0.54 +0.8
470,958 - 13964 mRNA_5596 0.70 +0.2
472,120 - +0.9
472,134 + +1.9
472,135 + +1.4
472,155 + +0.3
472,172 + +0.0
472,187 - +1.0
472,188 + -0.3
472,309 - +0.0
472,362 - +0.3
472,367 - -0.8
472,380 + +0.1
472,381 + -0.2
472,387 + -0.6
472,389 + +0.4
472,395 + +0.8
472,395 - +0.2
472,404 + +0.9
472,405 + -1.5
472,406 - +0.5
472,416 + +0.2
472,535 - +0.4
472,572 - -0.2
472,694 - +0.2

Or see this region's nucleotide sequence