Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5635

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14002 and 14003 are separated by 595 nucleotides14003 and 14004 are separated by 273 nucleotides mRNA_5634: 14002 - K00750 GYG1, GYG2 glycogenin, at 560,613 to 563,450 14002 mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564,046 to 564,667 14003 mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564,941 to 566,584 14004

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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563,109 + 14002 mRNA_5634 0.88 -0.1
563,379 - +0.3
563,541 - +0.4
563,791 + -0.5
563,984 - +0.7
564,021 - -0.5
564,409 - 14003 mRNA_5635 0.58 -0.2
564,705 + +0.7
564,715 - -0.0
564,716 + +0.1
564,720 + +0.4
564,835 - +1.2
564,870 - +0.6
564,987 - +1.6
565,166 + 14004 mRNA_5636 0.14 +0.8
565,328 - 14004 mRNA_5636 0.24 -0.5

Or see this region's nucleotide sequence