Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5656

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14023 and 14024 are separated by 667 nucleotides14024 and 14025 are separated by 168 nucleotides mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607,805 to 615,263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615,931 to 617,472 14024 mRNA_5657: 14025 - SUPERFAMILY--SSF52047, at 617,641 to 619,056 14025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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615,316 + +0.0
615,343 + +0.4
615,347 + +0.6
615,464 - +1.0
615,511 - +1.0
615,514 + +0.9
615,516 + -0.1
615,529 - +0.5
615,653 - -1.8
617,583 - +0.1
617,796 - 14025 mRNA_5657 0.11 +0.3
617,890 + 14025 mRNA_5657 0.18 -0.5
618,044 - 14025 mRNA_5657 0.28 -0.2
618,150 + 14025 mRNA_5657 0.36 +2.0
618,206 + 14025 mRNA_5657 0.40 -0.2

Or see this region's nucleotide sequence