Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5658

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14025 and 14026 are separated by 180 nucleotides14026 and 14027 are separated by 111 nucleotides mRNA_5657: 14025 - SUPERFAMILY--SSF52047, at 617,641 to 619,056 14025 mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619,237 to 620,685 14026 mRNA_5659: 14027 - KOG2422 Uncharacterized conserved protein, at 620,797 to 623,499 14027

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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618,478 - 14025 mRNA_5657 0.59 +0.6
618,528 + 14025 mRNA_5657 0.63 +1.1
618,684 - 14025 mRNA_5657 0.74 -1.3
618,772 - 14025 mRNA_5657 0.80 +0.4
618,817 + 14025 mRNA_5657 0.83 +0.7
618,824 + 14025 mRNA_5657 0.84 -0.1
618,960 - +0.4
618,981 + -0.4
619,012 + +1.1
619,126 + +0.7
619,373 + -0.3
619,413 + 14026 mRNA_5658 0.12 +0.6
619,863 - 14026 mRNA_5658 0.43 +1.1
619,868 - 14026 mRNA_5658 0.44 -0.0
620,046 + 14026 mRNA_5658 0.56 +1.3
620,159 + 14026 mRNA_5658 0.64 +0.6
620,318 - 14026 mRNA_5658 0.75 -0.3
620,442 - 14026 mRNA_5658 0.83 +0.3
620,449 - 14026 mRNA_5658 0.84 +0.3
620,573 - +0.6
620,591 + -0.9
620,594 + -0.4
620,612 + -0.1
620,763 - -0.6
621,188 - 14027 mRNA_5659 0.14 +0.0

Or see this region's nucleotide sequence