Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5659

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14026 and 14027 are separated by 111 nucleotides14027 and 14028 are separated by 146 nucleotides mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619,237 to 620,685 14026 mRNA_5659: 14027 - KOG2422 Uncharacterized conserved protein, at 620,797 to 623,499 14027 mRNA_5660: 14028 - Hypothetical Protein, at 623,646 to 625,624 14028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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619,863 - 14026 mRNA_5658 0.43 +1.1
619,868 - 14026 mRNA_5658 0.44 -0.0
620,046 + 14026 mRNA_5658 0.56 +1.3
620,159 + 14026 mRNA_5658 0.64 +0.6
620,318 - 14026 mRNA_5658 0.75 -0.3
620,442 - 14026 mRNA_5658 0.83 +0.3
620,449 - 14026 mRNA_5658 0.84 +0.3
620,573 - +0.6
620,591 + -0.9
620,594 + -0.4
620,612 + -0.1
620,763 - -0.6
621,188 - 14027 mRNA_5659 0.14 +0.0
622,867 + 14027 mRNA_5659 0.77 -0.5
622,957 - 14027 mRNA_5659 0.80 +1.0
623,688 - +1.0
623,699 + -0.5
623,704 + +0.0
623,713 + +0.2
623,722 - -0.8
623,819 - -0.4
624,235 + 14028 mRNA_5660 0.30 -0.5
624,239 - 14028 mRNA_5660 0.30 +0.6
624,358 - 14028 mRNA_5660 0.36 +1.8

Or see this region's nucleotide sequence