Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5684

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14051 and 14052 are separated by 74 nucleotides14052 and 14053 are separated by 108 nucleotides mRNA_5683: 14051 - K15505 RAD5 DNA repair protein RAD5, at 683,055 to 687,923 14051 mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687,998 to 689,292 14052 mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689,401 to 690,702 14053

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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687,000 + 14051 mRNA_5683 0.81 -0.4
687,144 + 14051 mRNA_5683 0.84 +0.3
687,294 + 14051 mRNA_5683 0.87 +1.3
687,367 + 14051 mRNA_5683 0.89 +0.2
687,490 + -1.6
687,504 + -0.2
687,609 - -1.2
688,016 + -0.1
688,169 - 14052 mRNA_5684 0.13 +0.8
688,197 + 14052 mRNA_5684 0.15 -0.7
688,416 - 14052 mRNA_5684 0.32 +1.1
688,488 - 14052 mRNA_5684 0.38 +0.4
688,494 - 14052 mRNA_5684 0.38 -1.9
688,756 + 14052 mRNA_5684 0.59 -0.1
688,764 - 14052 mRNA_5684 0.59 +1.2
688,776 - 14052 mRNA_5684 0.60 +1.5
688,778 - 14052 mRNA_5684 0.60 +0.7
688,782 - 14052 mRNA_5684 0.61 +0.7
688,784 + 14052 mRNA_5684 0.61 -0.6
688,795 + 14052 mRNA_5684 0.62 +1.5
688,933 - 14052 mRNA_5684 0.72 +0.6
689,057 - 14052 mRNA_5684 0.82 +0.1
689,069 - 14052 mRNA_5684 0.83 -0.7
689,098 + 14052 mRNA_5684 0.85 +0.0
689,206 - +0.7
689,210 - -0.2
689,227 + +0.8
689,245 + -0.1
689,254 - -0.1
689,385 + -0.9
689,402 - +0.5
690,241 - 14053 mRNA_5685 0.65 +0.4

Or see this region's nucleotide sequence