Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5689

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14056 and 14057 are separated by 121 nucleotides14057 and 14058 are separated by 279 nucleotides mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697,061 to 698,504 14056 mRNA_5689: 14057 - KOG4206 Spliceosomal protein snRNP-U1A/U2B, at 698,626 to 699,781 14057 mRNA_5690: 14058 - K17710 PTCD1 pentatricopeptide repeat domain-containing protein 1, at 700,061 to 702,418 14058

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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697,669 + 14056 mRNA_5688 0.42 +0.2
698,209 + 14056 mRNA_5688 0.80 +2.5
698,516 - +1.9
698,521 - -0.1
698,591 + +0.8
698,597 + +0.8
699,157 + 14057 mRNA_5689 0.46 -0.2
699,880 + +1.6
699,984 + -0.1
700,025 - -0.1

Or see this region's nucleotide sequence