Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5781

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14148 and 14149 are separated by 598 nucleotides14149 and 14150 are separated by 613 nucleotides mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208 14148 mRNA_5781: 14149 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 928,807 to 930,630 14149 mRNA_5782: 14150 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 931,244 to 933,171 14150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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928,382 + +0.4
928,689 + +0.8
928,977 + +0.5
928,989 - +1.4
929,118 + 14149 mRNA_5781 0.17 -0.5
929,122 - 14149 mRNA_5781 0.17 -0.8
929,407 - 14149 mRNA_5781 0.33 +0.1
929,412 - 14149 mRNA_5781 0.33 -0.1
929,546 - 14149 mRNA_5781 0.41 +0.1
929,557 + 14149 mRNA_5781 0.41 -1.5
929,570 + 14149 mRNA_5781 0.42 +0.1
929,691 - 14149 mRNA_5781 0.48 -0.0
929,696 - 14149 mRNA_5781 0.49 +0.9
929,854 - 14149 mRNA_5781 0.57 +0.2
929,978 - 14149 mRNA_5781 0.64 +0.2
930,126 + 14149 mRNA_5781 0.72 -0.0
930,316 + 14149 mRNA_5781 0.83 -0.2
930,548 - +0.3
930,713 - +0.4
930,834 + +0.2
930,893 - -0.9
931,019 - -0.3
931,039 - +0.3
931,047 + -0.2
931,047 + -0.2
931,049 + +0.3
931,628 - 14150 mRNA_5782 0.20 +1.4

Or see this region's nucleotide sequence