Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5814

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14181 and 14182 are separated by 168 nucleotides14182 and 14183 are separated by 380 nucleotides mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996,990 to 1,000,538 14181 mRNA_5814: 14182 - K06669 SMC3, CSPG6 structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6), at 1,000,707 to 1,005,630 14182 mRNA_5815: 14183 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 1,006,011 to 1,008,191 14183

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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999,908 + 14181 mRNA_5813 0.82 +0.8
999,941 - 14181 mRNA_5813 0.83 +0.7
1,000,073 - 14181 mRNA_5813 0.87 +0.3
1,000,213 - +0.8
1,000,219 + +0.1
1,000,222 - +0.9
1,000,368 + +0.7
1,000,368 + +1.6
1,000,514 + +1.0
1,000,653 - +1.1
1,000,657 + +0.2
1,000,660 - +1.0
1,005,645 - +0.0
1,005,690 - +0.4
1,005,722 - +0.8
1,005,724 - -0.2
1,005,760 + +0.1
1,005,768 - +0.9
1,005,797 - +0.5
1,005,798 - +0.5
1,005,800 + +0.0
1,005,814 + +0.0
1,005,960 + -0.0
1,005,964 + -0.5
1,005,966 + -0.0
1,006,306 - 14183 mRNA_5815 0.14 +0.4
1,006,547 + 14183 mRNA_5815 0.25 +0.6

Or see this region's nucleotide sequence