Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5844

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14211 and 14212 are separated by 323 nucleotides mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1,067,575 to 1,068,136 14211 mRNA_5844: 14212 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111, at 1,068,460 to 1,070,269 14212

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,067,816 + 14211 mRNA_5843 0.43 -0.5
1,067,823 + 14211 mRNA_5843 0.44 -0.1
1,067,844 + 14211 mRNA_5843 0.48 +0.0
1,067,852 + 14211 mRNA_5843 0.49 -0.8
1,067,943 - 14211 mRNA_5843 0.65 +0.9
1,067,986 - 14211 mRNA_5843 0.73 +1.7
1,067,992 - 14211 mRNA_5843 0.74 -0.0
1,068,454 + -0.1
1,068,574 + +0.3
1,068,721 + 14212 mRNA_5844 0.14 -1.0
1,068,984 + 14212 mRNA_5844 0.29 +0.9
1,069,573 + 14212 mRNA_5844 0.61 +0.7
1,070,164 - +0.2
1,070,182 + +0.6
1,070,195 - -0.3
1,070,469 + +0.3
1,070,478 - +0.3
1,070,510 + +0.0
1,070,655 + -2.2
1,070,780 + +0.7
1,071,213 - -0.5
1,071,220 - +0.5

Or see this region's nucleotide sequence