Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5847

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14214 and 14215 are separated by 719 nucleotides14215 and 14216 are separated by 735 nucleotides mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277 14214 mRNA_5847: 14215 - K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8, at 1,076,997 to 1,077,527 14215 mRNA_5848: 14216 - Hypothetical Protein, at 1,078,263 to 1,078,813 14216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,076,077 + +0.8
1,076,173 - -0.1
1,076,267 + +2.1
1,076,524 + +1.4
1,077,383 - 14215 mRNA_5847 0.73 +1.2
1,077,392 + 14215 mRNA_5847 0.74 +0.4
1,077,404 - 14215 mRNA_5847 0.77 +0.2
1,078,002 - +2.8
1,078,005 - -0.7
1,078,012 + -0.1
1,078,110 + +0.2
1,078,275 - -0.3

Or see this region's nucleotide sequence