Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5851

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14218 and 14219 are separated by 543 nucleotides14219 and 14220 are separated by 203 nucleotides mRNA_5850: 14218 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,082,825 to 1,084,341 14218 mRNA_5851: 14219 - SUPERFAMILY--SSF51735, at 1,084,885 to 1,085,792 14219 mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1,085,996 to 1,089,150 14220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,083,971 - 14218 mRNA_5850 0.76 +0.2
1,084,407 - +0.9
1,084,556 + +0.1
1,084,556 + -0.0
1,084,582 + +0.8
1,084,590 - -0.4
1,084,599 + +0.0
1,084,699 + +0.6
1,084,743 + -0.1
1,084,863 - +0.0
1,085,121 - 14219 mRNA_5851 0.26 +1.6
1,085,173 + 14219 mRNA_5851 0.32 -0.0
1,085,747 + +0.0
1,085,898 + +1.7
1,085,926 + +1.4
1,085,927 - +0.8
1,085,934 + +0.2
1,085,945 + -0.0

Or see this region's nucleotide sequence