Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5923

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14290 and 14291 are separated by 228 nucleotides14291 and 14292 are separated by 407 nucleotides mRNA_5922: 14290 - KOG2615 Permease of the major facilitator superfamily, at 1,248,033 to 1,250,292 14290 mRNA_5923: 14291 - Hypothetical Protein, at 1,250,521 to 1,252,359 14291 mRNA_5924: 14292 - Hypothetical Protein, at 1,252,767 to 1,253,649 14292

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,249,601 - 14290 mRNA_5922 0.69 +0.9
1,249,606 + 14290 mRNA_5922 0.70 +0.8
1,249,610 - 14290 mRNA_5922 0.70 +0.6
1,249,966 - 14290 mRNA_5922 0.86 +0.9
1,250,077 - +0.3
1,250,164 + +0.2
1,250,245 - +0.6
1,250,398 + +0.5
1,250,825 + 14291 mRNA_5923 0.17 +0.9
1,250,956 + 14291 mRNA_5923 0.24 +1.2
1,251,114 - 14291 mRNA_5923 0.32 -0.6
1,251,226 - 14291 mRNA_5923 0.38 -0.7
1,251,540 + 14291 mRNA_5923 0.55 +0.5
1,251,541 - 14291 mRNA_5923 0.55 +1.3
1,251,605 + 14291 mRNA_5923 0.59 -0.7
1,251,690 - 14291 mRNA_5923 0.64 +0.4
1,251,704 + 14291 mRNA_5923 0.64 +0.1
1,251,707 - 14291 mRNA_5923 0.64 +0.2
1,251,955 - 14291 mRNA_5923 0.78 +0.1
1,251,986 - 14291 mRNA_5923 0.80 -0.7
1,251,992 + 14291 mRNA_5923 0.80 -0.9
1,252,007 + 14291 mRNA_5923 0.81 -0.6
1,252,123 - 14291 mRNA_5923 0.87 +1.7
1,252,128 + 14291 mRNA_5923 0.87 +0.7
1,252,131 - 14291 mRNA_5923 0.88 +1.0
1,252,132 + 14291 mRNA_5923 0.88 +0.2
1,252,138 + 14291 mRNA_5923 0.88 +0.2
1,252,139 - 14291 mRNA_5923 0.88 -0.1
1,252,143 - 14291 mRNA_5923 0.88 -0.2
1,252,194 - +0.3
1,252,221 + -0.3
1,252,358 + +0.2
1,252,770 - +1.1

Or see this region's nucleotide sequence