Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6013

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14380 and 14381 are separated by 325 nucleotides14381 and 14382 are separated by 125 nucleotides mRNA_6012: 14380 - Hypothetical Protein, at 1,451,012 to 1,452,136 14380 mRNA_6013: 14381 - Hypothetical Protein, at 1,452,462 to 1,453,877 14381 mRNA_6014: 14382 - K14785 ESF2, ABT1 ESF2/ABP1 family protein, at 1,454,003 to 1,455,202 14382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,451,484 - 14380 mRNA_6012 0.42 +1.1
1,451,512 + 14380 mRNA_6012 0.44 -0.1
1,451,670 - 14380 mRNA_6012 0.58 -0.2
1,451,798 - 14380 mRNA_6012 0.70 +1.2
1,451,799 + 14380 mRNA_6012 0.70 +0.4
1,451,902 - 14380 mRNA_6012 0.79 +0.3
1,451,941 + 14380 mRNA_6012 0.83 +0.0
1,452,243 - +0.5
1,452,688 - 14381 mRNA_6013 0.16 +2.1
1,452,982 - 14381 mRNA_6013 0.37 -0.3
1,453,406 + 14381 mRNA_6013 0.67 +0.9
1,453,515 + 14381 mRNA_6013 0.74 +1.2
1,453,589 + 14381 mRNA_6013 0.80 +1.7
1,453,700 + 14381 mRNA_6013 0.87 +0.2
1,453,742 - +0.7
1,453,848 + +0.7

Or see this region's nucleotide sequence