Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6027

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14394 and 14395 are separated by 780 nucleotides14395 and 14396 are separated by 26 nucleotides mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1,476,488 to 1,478,196 14394 mRNA_6027: 14395 - HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797, at 1,478,977 to 1,480,198 14395 mRNA_6028: 14396 - KOG2521 Uncharacterized conserved protein, at 1,480,225 to 1,481,311 14396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,478,051 - +0.2
1,478,159 + +0.1
1,478,310 - -0.5
1,478,320 + +0.3
1,478,330 + +0.3
1,478,701 + +0.5
1,478,774 + -0.1
1,478,789 + +0.2
1,478,809 - -0.1
1,478,888 + +1.1
1,479,816 + 14395 mRNA_6027 0.69 +0.3
1,479,893 - 14395 mRNA_6027 0.75 -0.3
1,480,075 - 14395 mRNA_6027 0.90 -0.2
1,480,122 + +0.3
1,480,240 + -0.2
1,480,241 - -1.9
1,480,242 + +0.1
1,480,268 - -0.8
1,480,388 + 14396 mRNA_6028 0.15 +1.2
1,480,391 - 14396 mRNA_6028 0.15 +1.0
1,480,419 + 14396 mRNA_6028 0.18 -0.3
1,480,520 + 14396 mRNA_6028 0.27 +0.3
1,480,547 + 14396 mRNA_6028 0.30 +0.5
1,480,637 - 14396 mRNA_6028 0.38 +0.9
1,480,683 + 14396 mRNA_6028 0.42 +0.2
1,480,686 - 14396 mRNA_6028 0.42 -0.2
1,480,692 + 14396 mRNA_6028 0.43 -0.3
1,480,701 + 14396 mRNA_6028 0.44 +0.1
1,480,811 - 14396 mRNA_6028 0.54 -1.2
1,480,813 - 14396 mRNA_6028 0.54 -0.2
1,480,859 - 14396 mRNA_6028 0.58 -0.4
1,480,863 + 14396 mRNA_6028 0.59 -0.3
1,480,866 - 14396 mRNA_6028 0.59 -0.0
1,480,887 + 14396 mRNA_6028 0.61 +0.7
1,480,931 - 14396 mRNA_6028 0.65 +0.6
1,480,971 - 14396 mRNA_6028 0.69 -0.1
1,480,972 - 14396 mRNA_6028 0.69 +1.2
1,480,979 + 14396 mRNA_6028 0.69 +0.0
1,480,979 + 14396 mRNA_6028 0.69 +1.7
1,480,979 + 14396 mRNA_6028 0.69 +1.1
1,480,982 - 14396 mRNA_6028 0.70 +0.5
1,480,982 - 14396 mRNA_6028 0.70 -0.2
1,480,982 - 14396 mRNA_6028 0.70 +0.3
1,480,982 - 14396 mRNA_6028 0.70 -0.6
1,481,012 - 14396 mRNA_6028 0.72 +0.2
1,481,020 + 14396 mRNA_6028 0.73 -0.6
1,481,020 + 14396 mRNA_6028 0.73 -0.1
1,481,076 - 14396 mRNA_6028 0.78 +1.1
1,481,120 - 14396 mRNA_6028 0.82 +0.4

Or see this region's nucleotide sequence