Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6046

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14413 and 14414 are separated by 580 nucleotides14414 and 14415 are separated by 322 nucleotides mRNA_6045: 14413 - SUPERFAMILY--SSF54928, at 1,512,060 to 1,513,119 14413 mRNA_6046: 14414 - Hypothetical Protein, at 1,513,700 to 1,515,000 14414 mRNA_6047: 14415 - K17268 COPE coatomer subunit epsilon, at 1,515,323 to 1,516,944 14415

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,512,890 + 14413 mRNA_6045 0.78 +0.7
1,512,897 + 14413 mRNA_6045 0.79 -0.3
1,513,009 - 14413 mRNA_6045 0.90 +0.8
1,513,311 - +0.5
1,513,319 + +0.2
1,513,385 + -0.2
1,513,471 + -0.2
1,513,476 - -1.6
1,513,492 - -0.0
1,513,495 - +0.4
1,513,495 + +0.2
1,513,497 + +1.0
1,513,502 + -0.0
1,513,508 + -0.8
1,513,511 - +1.3
1,513,629 + +0.6
1,513,633 - -1.2
1,513,637 - +0.5
1,513,643 - -0.1
1,513,680 - +0.3
1,513,692 - -0.8
1,513,755 - -0.4
1,513,755 - +0.8
1,514,127 - 14414 mRNA_6046 0.33 +0.2
1,514,380 + 14414 mRNA_6046 0.52 +0.6
1,514,384 + 14414 mRNA_6046 0.53 +0.1
1,514,384 - 14414 mRNA_6046 0.53 +1.6
1,514,537 + 14414 mRNA_6046 0.64 +0.4
1,514,798 - 14414 mRNA_6046 0.84 -1.0
1,514,800 - 14414 mRNA_6046 0.85 +0.9
1,514,803 - 14414 mRNA_6046 0.85 +0.8
1,514,822 + 14414 mRNA_6046 0.86 +0.5
1,514,926 - +0.8
1,515,235 + +0.6
1,515,393 - +1.2
1,515,874 + 14415 mRNA_6047 0.34 +0.2

Or see this region's nucleotide sequence