Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6050

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14417 and 14418 are separated by 262 nucleotides14418 and 14419 are separated by 360 nucleotides mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1,519,896 to 1,521,308 14417 mRNA_6050: 14418 - K03942 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, at 1,521,571 to 1,523,726 14418 mRNA_6051: 14419 - Hypothetical Protein, at 1,524,087 to 1,525,475 14419

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,520,815 + 14417 mRNA_6049 0.65 -0.2
1,520,964 - 14417 mRNA_6049 0.76 +0.5
1,520,992 + 14417 mRNA_6049 0.78 -1.7
1,521,103 + 14417 mRNA_6049 0.85 -0.3
1,521,694 - -0.9
1,522,162 + 14418 mRNA_6050 0.27 -0.0
1,523,726 + +0.3
1,523,776 - -0.5
1,523,779 - -0.2
1,523,795 - +1.1
1,524,047 - -0.6
1,524,120 + -0.6
1,524,160 + -0.2
1,524,162 - -0.3
1,524,208 - +0.5
1,524,226 + 14419 mRNA_6051 0.10 -0.7
1,524,230 + 14419 mRNA_6051 0.10 +0.5
1,524,232 + 14419 mRNA_6051 0.10 -0.1
1,524,313 - 14419 mRNA_6051 0.16 +1.5
1,524,624 + 14419 mRNA_6051 0.39 -0.0
1,524,671 - 14419 mRNA_6051 0.42 +0.2
1,524,694 + 14419 mRNA_6051 0.44 +1.0

Or see this region's nucleotide sequence