Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6077

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14445 and 14446 are separated by 238 nucleotides mRNA_6077: 14445 - KOG3869 Uncharacterized conserved protein, at 1,590,853 to 1,592,368 14445 mRNA_6078: 14446 - HMMPfam-Essential protein Yae1, N terminal-PF09811, at 1,592,607 to 1,593,994 14446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,589,889 - -0.9
1,590,072 - +0.1
1,590,083 + +0.4
1,590,243 - -0.1
1,590,248 - +0.4
1,590,252 - -0.6
1,590,290 - +0.2
1,590,335 - +0.0
1,590,345 + +0.4
1,590,355 - -0.3
1,590,496 - +0.6
1,590,565 - +1.3
1,590,586 + +1.8
1,590,603 - +2.0
1,590,666 + -0.2
1,590,670 - -0.3
1,590,674 + +1.0
1,590,678 - +0.6
1,590,679 - -0.5
1,590,692 + +0.3
1,590,700 - +0.7
1,590,703 + +0.6
1,590,705 - +2.1
1,590,759 + +0.5
1,590,832 + -0.6
1,590,851 + +0.3
1,592,327 - -0.1
1,592,363 + +0.6
1,592,409 + -0.3
1,592,412 + -0.9
1,592,450 - +0.5
1,592,455 - +1.0
1,592,829 - 14446 mRNA_6078 0.16 -0.1
1,592,832 - 14446 mRNA_6078 0.16 +1.7
1,592,950 + 14446 mRNA_6078 0.25 +0.7
1,592,974 + 14446 mRNA_6078 0.26 -0.7
1,592,992 + 14446 mRNA_6078 0.28 +0.3
1,593,044 + 14446 mRNA_6078 0.31 +0.9

Or see this region's nucleotide sequence