Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6082

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14449 and 14450 are separated by 764 nucleotides14450 and 14451 are separated by 194 nucleotides mRNA_6081: 14449 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,598,988 to 1,602,551 14449 mRNA_6082: 14450 - K03010 RPB2, POLR2B DNA-directed RNA polymerase II subunit RPB2, at 1,603,316 to 1,607,774 14450 mRNA_6083: 14451 - Hypothetical Protein, at 1,607,969 to 1,610,179 14451

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,602,422 - +1.0
1,602,442 + +0.4
1,602,571 - +0.0
1,602,577 + +0.0
1,602,714 - +1.8
1,602,714 + +0.9
1,602,730 - +0.3
1,602,946 - +1.3
1,603,225 - +0.3
1,608,041 - +0.8
1,608,198 - 14451 mRNA_6083 0.10 -1.4
1,608,205 + 14451 mRNA_6083 0.11 +1.8
1,608,205 + 14451 mRNA_6083 0.11 +0.4
1,608,208 - 14451 mRNA_6083 0.11 +0.4
1,608,208 - 14451 mRNA_6083 0.11 -0.6
1,608,314 + 14451 mRNA_6083 0.16 +1.3
1,608,338 + 14451 mRNA_6083 0.17 -0.2
1,608,472 - 14451 mRNA_6083 0.23 +1.6
1,608,588 + 14451 mRNA_6083 0.28 +0.7
1,608,604 + 14451 mRNA_6083 0.29 -0.3

Or see this region's nucleotide sequence