Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6124

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14491 and 14492 are separated by 171 nucleotides mRNA_6123: 14491 - BLAST DNA polymerase [Rhizoctonia solani], at 56,792 to 57,276 14491 mRNA_6124: 14492 - Hypothetical Protein, at 57,448 to 58,239 14492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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56,646 + +0.4
56,662 + -0.3
56,666 + +0.2
56,775 - +1.3
56,781 + +0.7
56,864 + 14491 mRNA_6123 0.15 +1.0
57,075 - 14491 mRNA_6123 0.58 +1.3
57,218 - 14491 mRNA_6123 0.88 +0.1
57,397 - +0.5
57,401 + -0.2
57,555 + 14492 mRNA_6124 0.14 -1.2
57,645 - 14492 mRNA_6124 0.25 +0.3
57,677 + 14492 mRNA_6124 0.29 -0.8
57,819 - 14492 mRNA_6124 0.47 -0.1
57,825 + 14492 mRNA_6124 0.48 +0.1
57,827 - 14492 mRNA_6124 0.48 -0.3
57,834 + 14492 mRNA_6124 0.49 +0.1
57,834 + 14492 mRNA_6124 0.49 +0.9
57,943 - 14492 mRNA_6124 0.62 -0.3
57,948 - 14492 mRNA_6124 0.63 -0.2
57,975 + 14492 mRNA_6124 0.67 +0.1
57,984 - 14492 mRNA_6124 0.68 -0.1
58,132 - 14492 mRNA_6124 0.86 +0.7
58,139 + 14492 mRNA_6124 0.87 +1.6
58,151 - 14492 mRNA_6124 0.89 -0.4
58,159 - 14492 mRNA_6124 0.90 +0.3
58,191 + +1.1
58,443 + +0.2
58,564 + +0.8
58,744 - -1.1
58,864 + +1.1
58,917 - +0.5
59,024 - +0.5
59,190 + +0.1
59,202 - -0.0

Or see this region's nucleotide sequence