Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6130

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14497 and 14498 are separated by 91 nucleotides14498 and 14499 are separated by 511 nucleotides mRNA_6129: 14497 - Hypothetical Protein, at 71,681 to 73,838 14497 mRNA_6130: 14498 - K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2, at 73,930 to 78,529 14498 mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79,041 to 80,063 14499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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73,080 - 14497 mRNA_6129 0.65 -1.0
73,152 - 14497 mRNA_6129 0.68 -0.5
73,165 - 14497 mRNA_6129 0.69 -0.3
73,449 + 14497 mRNA_6129 0.82 -0.6
73,588 - 14497 mRNA_6129 0.88 -0.1
73,730 - -0.1
73,752 + +1.3
73,882 + +0.2
73,902 + -0.6
73,902 - -0.2
73,907 - +0.3
73,911 + +0.5
73,915 + -0.1
73,922 + +0.7
73,922 - +1.1
77,163 + 14498 mRNA_6130 0.70 -0.3
77,481 - 14498 mRNA_6130 0.77 -0.1
77,736 + 14498 mRNA_6130 0.83 +1.5
77,770 - 14498 mRNA_6130 0.83 -0.4
78,036 + 14498 mRNA_6130 0.89 +0.9
78,487 - +1.3
78,488 + -0.9
78,489 + +0.6
78,501 + +0.3
78,523 + +1.8
78,526 + -0.2
78,559 + -0.2
78,650 - +0.7
78,654 + +0.9
78,660 - -0.0
78,675 + +0.3
78,764 - +0.2
78,766 - +0.2
78,768 - +0.4
78,771 - +0.7
78,782 - +0.4
78,785 - +0.0
78,787 - +1.4
78,804 - +1.0
78,905 + -0.8
78,938 + -0.0
78,977 - -0.1

Or see this region's nucleotide sequence