Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6155

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14522 and 14523 are separated by 332 nucleotides mRNA_6154: 14522 - K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma, at 133,895 to 137,413 14522 mRNA_6155: 14523 - Hypothetical Protein, at 137,746 to 139,265 14523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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136,943 + 14522 mRNA_6154 0.87 +0.6
137,001 - 14522 mRNA_6154 0.88 +0.5
137,009 + 14522 mRNA_6154 0.88 +0.3
137,129 + +0.5
137,269 - +0.4
137,302 - +0.3
137,364 - +0.4
137,402 + +1.2
137,531 + +0.6
137,654 + +1.0
138,325 - 14523 mRNA_6155 0.38 +0.3
138,870 + 14523 mRNA_6155 0.74 -0.3
139,017 - 14523 mRNA_6155 0.84 +0.3
139,033 - 14523 mRNA_6155 0.85 +0.5
139,165 - -0.0
139,173 + +2.1
139,177 - -1.3
139,183 + +1.5
139,318 - +0.4
139,322 - +0.2
139,438 - +0.3
139,625 + +1.4
139,752 - +0.2
139,781 + -0.4
139,783 - +0.1
139,805 - -0.4
140,071 + -0.3
140,168 + -0.2

Or see this region's nucleotide sequence