Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6160

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14527 and 14528 are separated by 259 nucleotides14528 and 14529 are separated by 58 nucleotides14529 and 14530 are separated by 192 nucleotides mRNA_6159: 14527 - Hypothetical Protein, at 143,889 to 144,383 14527 mRNA_6160: 14528 - Hypothetical Protein, at 144,643 to 145,145 14528 mRNA_6161: 14529 - Hypothetical Protein, at 145,204 to 145,497 14529 mRNA_6162: 14530 - K11427 DOT1L, DOT1 histone-lysine N-methyltransferase, H3 lysine-79 specific, at 145,690 to 148,355 14530

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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143,883 + +0.8
143,895 - -0.3
143,898 + +0.1
143,913 + +1.3
143,929 - +0.6
144,494 + +0.1
144,497 + +0.1
144,605 - -0.7
144,632 - -0.1
145,064 + 14528 mRNA_6160 0.84 +0.4
145,095 - +0.6
145,361 + 14529 mRNA_6161 0.53 -0.1
145,375 + 14529 mRNA_6161 0.58 -0.4
145,404 + 14529 mRNA_6161 0.68 +0.6
145,405 + 14529 mRNA_6161 0.68 +0.3
145,409 + 14529 mRNA_6161 0.70 -0.6
145,489 - +2.1
145,497 + +0.2
145,524 - +0.7
145,527 + +0.2
145,527 + +0.8
145,527 + +0.2
145,941 + +0.6
145,969 - 14530 mRNA_6162 0.10 +0.8

Or see this region's nucleotide sequence