Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6166

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14533 and 14534 are separated by 151 nucleotides14534 and 14535 are separated by 545 nucleotides mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151,697 to 155,852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156,004 to 157,222 14534 mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157,768 to 160,667 14535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,074 - 14533 mRNA_6165 0.81 -0.0
155,074 - 14533 mRNA_6165 0.81 -0.2
155,128 - 14533 mRNA_6165 0.83 +1.3
155,185 - 14533 mRNA_6165 0.84 -1.0
155,224 - 14533 mRNA_6165 0.85 +0.5
155,226 + 14533 mRNA_6165 0.85 -0.5
155,337 - 14533 mRNA_6165 0.88 +2.0
155,504 + -0.1
155,627 + +1.5
155,645 - +0.5
155,652 + +1.1
155,661 - +0.1
155,822 + +0.3
155,823 + +0.4
155,832 + +1.3
155,926 - -0.3
155,926 - -0.1
155,931 - +0.2
155,956 + +0.2
155,960 - +1.6
155,970 - +1.1
156,148 + 14534 mRNA_6166 0.12 -0.4
156,252 - 14534 mRNA_6166 0.20 +0.5
156,729 - 14534 mRNA_6166 0.59 +1.0
156,832 - 14534 mRNA_6166 0.68 +0.5
156,935 - 14534 mRNA_6166 0.76 +0.1
156,975 - 14534 mRNA_6166 0.80 +1.0
157,097 - 14534 mRNA_6166 0.90 +0.6
157,257 + -0.5
157,547 - +0.8
157,681 - +0.6
157,784 + -0.4

Or see this region's nucleotide sequence