Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6185

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14552 and 14553 are separated by 208 nucleotides14553 and 14554 are separated by 197 nucleotides mRNA_6184: 14552 - Hypothetical Protein, at 202,342 to 203,677 14552 mRNA_6185: 14553 - SUPERFAMILY--SSF69118, at 203,886 to 204,987 14553 mRNA_6186: 14554 - K01613 psd, PISD phosphatidylserine decarboxylase, at 205,185 to 207,177 14554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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203,055 + 14552 mRNA_6184 0.53 +1.7
203,540 - 14552 mRNA_6184 0.90 -0.0
203,549 - +0.2
203,567 - +0.6
203,706 + -0.8
203,814 - +0.3
203,852 - +1.0
203,855 - +0.5
203,875 + +0.3
203,888 + +1.3
203,983 - +0.2
203,984 + -1.0
203,986 - +0.6
204,003 + 14553 mRNA_6185 0.11 +0.4
204,005 + 14553 mRNA_6185 0.11 -0.2
204,018 + 14553 mRNA_6185 0.12 -0.5
204,057 + 14553 mRNA_6185 0.16 -1.5
204,317 + 14553 mRNA_6185 0.39 +0.2
204,441 + 14553 mRNA_6185 0.50 +0.5
205,010 + +0.3
205,038 + -1.3
205,193 + +0.4

Or see this region's nucleotide sequence