Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6194

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14561 and 14562 are separated by 135 nucleotides14562 and 14563 are separated by 177 nucleotides mRNA_6193: 14561 - Hypothetical Protein, at 221,060 to 222,668 14561 mRNA_6194: 14562 - SUPERFAMILY--SSF56112, at 222,804 to 223,699 14562 mRNA_6195: 14563 - SUPERFAMILY--SSF52047, at 223,877 to 225,110 14563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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221,814 + 14561 mRNA_6193 0.47 +1.0
222,267 - 14561 mRNA_6193 0.75 -0.4
222,718 + +0.1
222,825 + +0.6
222,857 - +0.2
222,876 + +1.7
223,013 + 14562 mRNA_6194 0.23 +0.2
223,048 - 14562 mRNA_6194 0.27 -1.1
223,180 - 14562 mRNA_6194 0.42 -0.3
223,575 - 14562 mRNA_6194 0.86 +0.0
223,607 - 14562 mRNA_6194 0.90 +0.6
224,172 + 14563 mRNA_6195 0.24 +2.1
224,323 - 14563 mRNA_6195 0.36 +0.4
224,345 + 14563 mRNA_6195 0.38 +0.8
224,466 - 14563 mRNA_6195 0.48 +0.7

Or see this region's nucleotide sequence