Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6223

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14590 and 14591 are separated by 544 nucleotides14591 and 14592 are separated by 961 nucleotides mRNA_6222: 14590 - K07088 K07088 uncharacterized protein, at 285,427 to 287,812 14590 mRNA_6223: 14591 - BLAST acetyl-coenzyme A synthetase [Rhizoctonia solani AG-1..., at 288,357 to 288,729 14591 mRNA_6224: 14592 - Hypothetical Protein, at 289,691 to 292,264 14592

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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287,376 - 14590 mRNA_6222 0.82 -1.1
287,382 + 14590 mRNA_6222 0.82 +1.7
287,793 - +0.5
288,060 + +0.7
288,060 - -0.3
288,078 - +0.1
288,079 + +0.8
288,086 + -0.3
288,089 + +0.2
288,110 - +1.2
288,113 - +0.4
288,117 - -0.8
288,129 - +0.5
288,229 + -0.5
288,246 - -0.5
288,387 - -0.6
288,536 - 14591 mRNA_6223 0.48 +0.4
288,548 + 14591 mRNA_6223 0.51 +0.5
288,553 + 14591 mRNA_6223 0.53 +1.9
288,558 + 14591 mRNA_6223 0.54 +0.1
288,558 + 14591 mRNA_6223 0.54 +1.1
288,561 - 14591 mRNA_6223 0.55 +0.2
288,563 + 14591 mRNA_6223 0.55 +0.1
288,565 - 14591 mRNA_6223 0.56 +0.1
288,566 + 14591 mRNA_6223 0.56 +0.5
288,568 + 14591 mRNA_6223 0.57 +0.2
288,573 + 14591 mRNA_6223 0.58 -0.4
288,608 + 14591 mRNA_6223 0.67 +0.2
288,693 - +0.7
288,704 + -0.2
288,707 + -0.5
288,715 + +1.3
288,717 + +0.1
288,718 - +1.8
288,997 + -0.2
289,024 - +0.4
289,173 + +0.2
289,429 + -0.5
289,447 + +0.1

Or see this region's nucleotide sequence