Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6237

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14604 and 14605 are separated by 264 nucleotides14605 and 14606 are separated by 589 nucleotides mRNA_6236: 14604 - Hypothetical Protein, at 319,520 to 321,215 14604 mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321,480 to 324,944 14605 mRNA_6238: 14606 - K13205 AAR2, C20orf4 A1 cistron-splicing factor AAR2, at 325,534 to 327,076 14606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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320,495 - 14604 mRNA_6236 0.57 +0.1
320,525 - 14604 mRNA_6236 0.59 +1.1
320,626 + 14604 mRNA_6236 0.65 +0.9
320,765 - 14604 mRNA_6236 0.73 -0.4
320,924 + 14604 mRNA_6236 0.83 -0.1
321,070 + +0.2
321,071 + +0.2
321,076 - -0.1
321,214 + +0.8
321,217 + -0.1
321,230 + +0.6
321,239 - +0.6
321,385 + -0.4
321,513 - +0.6
321,655 - +0.5
321,976 - 14605 mRNA_6237 0.14 +2.4
322,115 + 14605 mRNA_6237 0.18 +0.5
322,147 + 14605 mRNA_6237 0.19 +0.3
322,263 + 14605 mRNA_6237 0.23 -0.1
322,429 + 14605 mRNA_6237 0.27 +1.0
322,640 + 14605 mRNA_6237 0.33 -0.0
322,990 + 14605 mRNA_6237 0.44 +0.7
323,105 - 14605 mRNA_6237 0.47 +0.1
323,293 + 14605 mRNA_6237 0.52 +0.4
323,328 - 14605 mRNA_6237 0.53 -0.5
323,563 + 14605 mRNA_6237 0.60 +0.2
323,667 + 14605 mRNA_6237 0.63 +0.2
323,703 + 14605 mRNA_6237 0.64 +0.4
323,758 + 14605 mRNA_6237 0.66 +0.9
323,834 + 14605 mRNA_6237 0.68 +0.3
324,167 - 14605 mRNA_6237 0.78 +0.1
324,271 - 14605 mRNA_6237 0.81 +0.6
324,386 - 14605 mRNA_6237 0.84 -0.9
324,411 + 14605 mRNA_6237 0.85 -1.0
324,412 - 14605 mRNA_6237 0.85 -0.1
324,428 + 14605 mRNA_6237 0.85 +0.2
324,552 + 14605 mRNA_6237 0.89 +0.1
324,968 + +1.5
324,991 - -0.3
325,002 - +0.2
325,127 - +0.3
325,159 + +0.2
325,292 - -0.7
325,297 + +0.4
325,308 + -0.0
325,424 - +0.3
325,441 - +1.2
325,448 - +0.3
325,460 - -0.3
325,462 - +0.2
325,463 + +0.5
325,470 + +0.7
325,473 - +0.4
325,481 + +0.2
325,495 + +0.9
325,533 - -0.8
325,556 - -0.8
325,574 + +0.6
325,598 + +0.4

Or see this region's nucleotide sequence