Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6283

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14650 and 14651 are separated by 330 nucleotides14651 and 14652 are separated by 141 nucleotides mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433,495 to 438,419 14650 mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438,750 to 440,581 14651 mRNA_6284: 14652 - BLAST macrofage activating glycoprotein, putative [Rhizocto..., at 440,723 to 442,428 14652

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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438,347 + +1.0
438,446 + +0.9
438,600 - +0.4
438,758 + -0.1
438,882 + +0.7
439,463 - 14651 mRNA_6283 0.39 +0.4
440,318 + 14651 mRNA_6283 0.86 -0.4
440,324 + 14651 mRNA_6283 0.86 -0.5
440,325 + 14651 mRNA_6283 0.86 +0.3
440,331 + 14651 mRNA_6283 0.86 -0.1
440,332 + 14651 mRNA_6283 0.86 +0.2
440,334 + 14651 mRNA_6283 0.86 +1.1
440,335 - 14651 mRNA_6283 0.87 -0.1
440,336 - 14651 mRNA_6283 0.87 +0.5
440,628 - -0.3
440,629 - +0.4
440,630 + -1.8
440,633 - +0.0
440,641 - -0.6
440,646 + -1.2
440,796 - -0.3
441,382 - 14652 mRNA_6284 0.39 +0.6
441,402 + 14652 mRNA_6284 0.40 +0.7
441,517 - 14652 mRNA_6284 0.47 +0.4

Or see this region's nucleotide sequence