Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6330

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14697 and 14698 are separated by 245 nucleotides14698 and 14699 are separated by 850 nucleotides mRNA_6329: 14697 - BLAST clp1-like protein [Moniliophthora roreri MCA 2997], at 559,094 to 560,421 14697 mRNA_6330: 14698 - K03119 tauD taurine dioxygenase, at 560,667 to 562,112 14698 mRNA_6331: 14699 - Hypothetical Protein, at 562,963 to 566,521 14699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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559,794 - 14697 mRNA_6329 0.53 +1.6
559,819 - 14697 mRNA_6329 0.55 -0.1
559,850 + 14697 mRNA_6329 0.57 +2.0
559,968 - 14697 mRNA_6329 0.66 +0.2
560,291 - +0.6
560,413 + +0.8
560,453 + -0.3
560,464 + +1.2
560,541 + +0.3
561,135 - 14698 mRNA_6330 0.32 -0.0
561,182 - 14698 mRNA_6330 0.36 +0.4
561,184 - 14698 mRNA_6330 0.36 -1.1
561,189 - 14698 mRNA_6330 0.36 +1.1
561,311 + 14698 mRNA_6330 0.45 +1.1
561,327 - 14698 mRNA_6330 0.46 +1.1
561,812 + 14698 mRNA_6330 0.79 -0.1
561,898 + 14698 mRNA_6330 0.85 +0.8
562,063 + -0.5
562,152 + +1.2
562,175 + +0.4
562,287 - +1.0
562,314 - +1.6
562,321 + +0.8
562,328 - +1.8
562,407 - +2.0
562,467 - +0.4
562,471 + +0.2
562,477 + -0.3
562,480 - +0.2
562,484 - +0.6
562,491 + -0.4
562,496 - -0.4
562,497 + +0.2
562,501 + +0.3
562,503 - -0.0
562,507 + -1.3
562,507 + +0.1
562,511 + +1.2
562,518 + -0.3
562,617 - +1.3
562,619 + +0.1
562,622 - +0.2
562,623 + +0.2
562,624 + -0.0
562,624 + -0.5
562,632 + -0.4
562,633 + -0.3
562,640 - +1.2
562,641 - -1.0
562,646 + -0.2
562,658 + +0.8
562,927 - -0.4
562,932 - +0.2
562,932 - +0.6
562,933 + -0.2
562,942 - +0.3
562,955 + +0.4
563,107 - +0.7

Or see this region's nucleotide sequence