Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6356

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14723 and 14724 are separated by 185 nucleotides14724 and 14725 are separated by 308 nucleotides mRNA_6355: 14723 - KOG4532 WD40-like repeat containing protein, at 619,648 to 622,272 14723 mRNA_6356: 14724 - K01477 alc, ALLC allantoicase, at 622,458 to 625,058 14724 mRNA_6357: 14725 - HMMPfam-Ribonuclease-III-like-PF14622,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 625,367 to 626,592 14725

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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621,459 + 14723 mRNA_6355 0.69 -0.6
621,609 - 14723 mRNA_6355 0.75 +0.1
621,877 + 14723 mRNA_6355 0.85 +0.1
622,314 - +0.4
622,329 - +0.5
622,329 - +0.4
622,340 + +0.4
622,368 + +0.8
622,369 - +0.5
622,935 - 14724 mRNA_6356 0.18 +0.4
623,229 - 14724 mRNA_6356 0.30 -0.3
623,361 + 14724 mRNA_6356 0.35 +0.6
623,976 - 14724 mRNA_6356 0.58 +1.2
624,372 - 14724 mRNA_6356 0.74 +0.3
624,536 + 14724 mRNA_6356 0.80 +0.7
624,554 + 14724 mRNA_6356 0.81 +0.4
624,829 + +0.6
624,839 + +0.3
624,851 - -0.4
624,853 + -0.1
624,994 + +0.3
624,995 - -0.4
625,015 - +1.4
625,113 + +0.8
625,164 + -0.1
625,174 + +1.5
625,197 + +0.5
625,253 - -0.2
625,299 - +0.7
625,481 - +0.3

Or see this region's nucleotide sequence