Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6359

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14727 and 14728 are separated by 661 nucleotides mRNA_6359: 14727 - KOG1812 Predicted E3 ubiquitin ligase, at 630,775 to 633,081 14727 mRNA_6360: 14728 - K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22, at 633,743 to 634,504 14728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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629,794 + -0.2
629,797 + +0.1
629,809 - -0.3
629,812 - +0.5
629,827 - +0.0
629,842 - +0.0
629,850 + +0.7
629,858 - +0.2
629,859 + +0.2
629,864 + +0.5
629,893 - +0.7
629,899 + +0.6
629,902 + -0.8
629,903 - +0.4
629,911 + -0.2
629,917 - +1.3
629,919 - +1.7
629,926 + -0.0
629,956 + +0.6
629,958 + +0.8
629,959 - +0.5
629,976 - +0.7
629,984 + +0.4
629,985 + +1.7
630,000 - +0.7
630,003 + -0.5
630,004 + +1.4
630,008 + -1.3
630,010 + +0.6
630,013 - -0.1
630,024 + +0.2
630,036 - +0.6
630,040 - +0.2
630,041 + +0.1
630,056 - -0.0
630,064 - -0.6
630,159 + +0.5
630,165 - +0.7
630,169 - +1.4
630,183 + +0.5
630,198 - -0.4
630,220 + +0.1
630,234 + -0.7
630,280 + -0.0
630,281 + -0.4
630,285 - +0.4
630,312 - +2.0
630,325 + +0.4
630,343 - -0.2
630,351 + +0.0
630,355 - +0.1
630,355 - -0.2
630,362 - +0.8
630,373 - -0.9
630,375 + +0.3
630,376 - -1.0
630,376 - -1.0
630,379 + +0.7
630,390 + +0.4
630,397 - +0.4
630,446 + +0.8
630,459 - +0.6
630,542 + -0.1
630,588 - +1.1
630,604 - +0.1
630,984 - +1.6
631,191 - 14727 mRNA_6359 0.18 -0.1
631,271 - 14727 mRNA_6359 0.21 +0.3
631,301 - 14727 mRNA_6359 0.23 +0.4
631,310 + 14727 mRNA_6359 0.23 +0.2
631,622 + 14727 mRNA_6359 0.37 +0.5
631,798 - 14727 mRNA_6359 0.44 +0.4
632,038 - 14727 mRNA_6359 0.55 +2.1
632,184 + 14727 mRNA_6359 0.61 +1.1
632,207 + 14727 mRNA_6359 0.62 +0.1
632,533 - 14727 mRNA_6359 0.76 +0.4
632,673 - 14727 mRNA_6359 0.82 +0.8
632,771 - 14727 mRNA_6359 0.87 +0.3
632,903 + -0.2
632,915 - +0.3
632,951 + +0.3
633,227 - +0.4
633,239 + +0.1
633,350 + +0.1
633,352 - +1.1
633,363 - +0.3
633,368 - +0.1
633,377 + +1.4
633,508 + +0.9
633,508 - -1.1
633,682 - -0.3
633,762 - -0.4

Or see this region's nucleotide sequence