Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6419

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14786 and 14787 are separated by 416 nucleotides14787 and 14788 are separated by 83 nucleotides mRNA_6418: 14786 - K02127 ATPeF0B, ATP5F1, ATP4 F-type H+-transporting ATPase subunit b, at 760,341 to 761,286 14786 mRNA_6419: 14787 - KOG0744 AAA+-type ATPase, at 761,703 to 763,959 14787 mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055 14788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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761,322 - +1.9
761,531 + +1.0
761,633 + +0.8
761,662 - -0.3
761,775 + +1.7
761,814 - -0.1
762,180 - 14787 mRNA_6419 0.21 +0.7
762,210 + 14787 mRNA_6419 0.22 -0.1
762,269 + 14787 mRNA_6419 0.25 +0.7
762,341 - 14787 mRNA_6419 0.28 -0.5
762,637 - 14787 mRNA_6419 0.41 +0.2
763,378 + 14787 mRNA_6419 0.74 +1.1
763,897 + +1.2
763,981 + +0.4
764,519 + 14788 mRNA_6420 0.47 -0.2
764,569 + 14788 mRNA_6420 0.52 +0.7
764,829 - 14788 mRNA_6420 0.78 +0.1

Or see this region's nucleotide sequence