Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6425

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14791 and 14792 are separated by 86 nucleotides14792 and 14793 are separated by 109 nucleotides14793 and 14794 are separated by 294 nucleotides mRNA_6423: 14791 - Hypothetical Protein, at 768,388 to 769,029 14791 mRNA_6424: 14792 - Hypothetical Protein, at 769,116 to 769,372 14792 mRNA_6425: 14793 - SUPERFAMILY--SSF52047, at 769,482 to 770,429 14793 mRNA_6426: 14794 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 770,724 to 773,097 14794

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
768,595 + 14791 mRNA_6423 0.32 +0.2
769,193 - 14792 mRNA_6424 0.30 -1.9
769,555 - +0.6
769,780 - 14793 mRNA_6425 0.31 +0.4
770,069 + 14793 mRNA_6425 0.62 -0.3
770,072 + 14793 mRNA_6425 0.62 -0.7
770,197 - 14793 mRNA_6425 0.75 +0.3
770,304 + 14793 mRNA_6425 0.87 +0.5
770,309 + 14793 mRNA_6425 0.87 -0.6
770,342 - +0.2
770,348 + +0.1
770,507 + +1.3
770,642 + +1.3
770,642 - +0.5
770,664 - +2.2
770,668 - +0.1

Or see this region's nucleotide sequence