Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6440

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14807 and 14808 are separated by 439 nucleotides14808 and 14809 are separated by 131 nucleotides mRNA_6439: 14807 - Hypothetical Protein, at 801,024 to 801,752 14807 mRNA_6440: 14808 - Hypothetical Protein, at 802,192 to 802,893 14808 mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803,025 to 805,267 14809

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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801,238 + 14807 mRNA_6439 0.29 -0.2
801,368 + 14807 mRNA_6439 0.47 +0.4
801,457 - 14807 mRNA_6439 0.59 -0.6
801,520 - 14807 mRNA_6439 0.68 -0.2
801,559 + 14807 mRNA_6439 0.73 -1.6
801,780 - +0.9
801,826 - +0.2
801,838 - +0.6
802,135 + +0.3
802,282 + 14808 mRNA_6440 0.13 +0.5
802,556 - 14808 mRNA_6440 0.52 +0.2
802,594 - 14808 mRNA_6440 0.57 +1.1
802,655 - 14808 mRNA_6440 0.66 +0.3
802,696 + 14808 mRNA_6440 0.72 +0.6
802,729 - 14808 mRNA_6440 0.76 +1.6
802,773 + 14808 mRNA_6440 0.83 +0.3
802,844 - +0.1
802,908 + -0.0
803,674 - 14809 mRNA_6441 0.29 +0.2
803,750 - 14809 mRNA_6441 0.32 -0.6

Or see this region's nucleotide sequence