Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6469

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14836 and 14837 are separated by 111 nucleotides14837 and 14838 are separated by 396 nucleotides mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853,896 to 857,931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864,745 to 865,870 14838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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857,804 + +1.8
857,872 + -0.1
857,900 + +0.7
858,041 + -1.9
858,150 - +0.8
860,303 - 14837 mRNA_6469 0.36 +0.6
861,323 - 14837 mRNA_6469 0.52 +0.2
861,728 + 14837 mRNA_6469 0.58 -0.4
862,446 + 14837 mRNA_6469 0.70 -0.5
862,563 - 14837 mRNA_6469 0.72 +0.2
863,932 - -0.0
863,938 - +0.2
864,093 - +0.0
864,093 - +1.0
864,182 + -0.9
864,385 - +0.6
864,401 + -0.1
864,685 + +0.1
864,793 + +0.4
864,842 + +0.8
864,869 - 14838 mRNA_6470 0.11 +0.4
864,977 + 14838 mRNA_6470 0.21 -0.3
864,979 + 14838 mRNA_6470 0.21 +0.9
864,986 - 14838 mRNA_6470 0.21 +0.6
865,031 + 14838 mRNA_6470 0.25 -0.1
865,139 + 14838 mRNA_6470 0.35 -0.3
865,170 + 14838 mRNA_6470 0.38 -0.1
865,302 - 14838 mRNA_6470 0.49 +0.2

Or see this region's nucleotide sequence