Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6505

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14872 and 14873 are separated by 429 nucleotides14873 and 14874 are separated by 408 nucleotides mRNA_6504: 14872 - Hypothetical Protein, at 941,388 to 943,563 14872 mRNA_6505: 14873 - Hypothetical Protein, at 943,993 to 944,857 14873 mRNA_6506: 14874 - KOG2712 Transcriptional coactivator, at 945,266 to 946,046 14874

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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943,606 + +1.3
944,075 - +0.4
944,331 + 14873 mRNA_6505 0.39 -0.4
944,486 - 14873 mRNA_6505 0.57 -0.7
944,490 - 14873 mRNA_6505 0.57 +1.0
944,511 - 14873 mRNA_6505 0.60 -0.2
944,619 - 14873 mRNA_6505 0.72 +0.9
944,950 - -0.5
945,569 + 14874 mRNA_6506 0.39 +0.3
945,630 + 14874 mRNA_6506 0.47 -2.0
945,790 - 14874 mRNA_6506 0.67 -0.4
945,818 + 14874 mRNA_6506 0.71 +0.5

Or see this region's nucleotide sequence